Publications

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  1. Ru J, Li P, Wang J, Zhou W, Li B, Huang C, Li P, Guo Z, Tao W, Yang Y, Xu X. TCMSP: a database of systems pharmacology for drug discovery from herbal medicines. Journal of cheminformatics. 2014 Dec;6:1-6.

  2. Ru J, Khan Mirzaei M, Xue J, Peng X, Deng L. ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis. Gut Microbes. 2023 Dec 31;15(1):2192522.

  3. Ru J#, Xue J#, Sun J, Cova L, Deng L. Unveiling the hidden role of aquatic viruses in hydrocarbon pollution bioremediation. Journal of Hazardous Materials. 2023 Aug 15:132299.

  4. Ma T#, Ru J#, Xue J, Schulz S, Mirzaei MK, Janssen KP, Quante M, Deng L. Differences in gut virome related to barrett esophagus and esophageal adenocarcinoma. Microorganisms. 2021 Aug 10;9(8):1701.

  5. Sun J#, Ru J#, Ramos-Mucci L, Qi F, Chen Z, Chen S, Cribbs AP, Deng L, Wang X. DeepsmirUD: Prediction of Regulatory Effects on microRNA Expression Mediated by Small Molecules Using Deep Learning. International Journal of Molecular Sciences. 2023 Jan 18;24(3):1878.

    (#: Co-first author)